There is a very popular theory conjecture doing the rounds among Star Wars fans, that Baby Yoda water reflection Piccolo shirt is actually the secret love-child of Yoda and Yaddle, who is the female Yoda who appeared on the Jedi high council, in Star Wars. The theory is that since the Yoda species is extremely rare to find, this is the reason why Doctor Pershing wanted to get his hands on Baby Yoda to clone him. We know that the Kaminoan cloners were experts in their fields long before they got the job of making clone troopers from the DNA of Jango Fett for the federation.
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So making the stormtroopers was definitely not the Baby Yoda water reflection Piccolo shirt first assignment as they were already expert cloners long before they took that particular job. And we can be pretty sure that Yoda in his younger days hundreds of years or more ago likely annoyed more than a couple of Siths in his time and built a name for himself as an extremely powerful force user long before becoming a member of any Jedi Council.